rtables - Reporting Tables

Reporting tables often have structure that goes beyond simple rectangular data. The 'rtables' package provides a framework for declaring complex multi-level tabulations and then applying them to data. This framework models both tabulation and the resulting tables as hierarchical, tree-like objects which support sibling sub-tables, arbitrary splitting or grouping of data in row and column dimensions, cells containing multiple values, and the concept of contextual summary computations. A convenient pipe-able interface is provided for declaring table layouts and the corresponding computations, and then applying them to data.

Last updated 8 days ago

pharmaceuticalstables

216 stars 6.31 score 13 dependencies 13 dependents

tern - Create Common TLGs Used in Clinical Trials

Table, Listings, and Graphs (TLG) library for common outputs used in clinical trials.

Last updated 14 days ago

clinical-trialsgraphslistingsnestoutputstables

72 stars 5.34 score 69 dependencies 7 dependents

rlistings - Clinical Trial Style Data Readout Listings

Listings are often part of the submission of clinical trial data in regulatory settings. We provide a framework for the specific formatting features often used when displaying large datasets in that context.

Last updated 15 days ago

21 stars 3.48 score 18 dependencies 1 dependents

formatters - ASCII Formatting for Values and Tables

We provide a framework for rendering complex tables to ASCII, and a set of formatters for transforming values or sets of values into ASCII-ready display strings.

Last updated 16 days ago

formatmatrixtable

15 stars 4.42 score 10 dependencies 16 dependents

tern.gee - Tables and Graphs for Generalized Estimating Equations (GEE) Model Fits

Generalized estimating equations (GEE) are a popular choice for analyzing longitudinal binary outcomes. This package provides an interface for fitting GEE, currently for logistic regression, within the 'tern' <https://cran.r-project.org/package=tern> framework (Zhu, Sabanés Bové et al., 2023) and tabulate results easily using 'rtables' <https://cran.r-project.org/package=rtables> (Becker, Waddell et al., 2023). It builds on 'geepack' <doi:10.18637/jss.v015.i02> (Højsgaard, Halekoh and Yan, 2006) for the actual GEE model fitting.

Last updated 23 days ago

8 stars 2.54 score 117 dependencies 1 dependents

tern.mmrm - Tables and Graphs for Mixed Models for Repeated Measures (MMRM)

Mixed models for repeated measures (MMRM) are a popular choice for analyzing longitudinal continuous outcomes in randomized clinical trials and beyond; see for example Cnaan, Laird and Slasor (1997) <doi:10.1002/(SICI)1097-0258(19971030)16:20%3C2349::AID-SIM667%3E3.0.CO;2-E>. This package provides an interface for fitting MMRM within the 'tern' <https://cran.r-project.org/package=tern> framework by Zhu et al. (2023) and tabulate results easily using 'rtables' <https://cran.r-project.org/package=rtables> by Becker et al. (2023). It builds on 'mmrm' <https://cran.r-project.org/package=mmrm> by Sabanés Bové et al. (2023) for the actual MMRM computations.

Last updated 23 days ago

graphslistingsstatistical-engineeringtables

6 stars 2.74 score 90 dependencies 1 dependents

teal.modules.clinical - 'teal' Modules for Standard Clinical Outputs

Provides user-friendly tools for creating and customizing clinical trial reports. By leveraging the 'teal' framework, this package provides 'teal' modules to easily create an interactive panel that allows for seamless adjustments to data presentation, thereby streamlining the creation of detailed and accurate reports.

Last updated 2 months ago

clinical-trialsmodulesnestoutputsshiny

29 stars 4.29 score 196 dependencies

filters - A "Snake_case" Filter System for R

Enables filtering datasets by a prior specified identifiers which correspond to saved filter expressions.

Last updated 3 months ago

0.09 score 4 dependencies

tern.rbmi - Create interface for rbmi and tern

`RBMI` tabulation with `rtables` and `tern` packages.

Last updated 3 months ago

graphslistingstables

3 stars 1.95 score 103 dependencies

random.cdisc.data - Create Random ADaM Datasets

A set of functions to create random Analysis Data Model (ADaM) datasets and cached dataset. ADaM dataset specifications are described by the Clinical Data Interchange Standards Consortium (CDISC) Analysis Data Model Team.

Last updated 3 months ago

0.09 score 26 dependencies

scda.2022 - Synthetic CDISC Data Archive 2022

An archive of synthetic CDISC data for 2022.

Last updated 12 months ago

cdiscnestsynthetic-data

9 stars 2.27 score 0 dependencies

nestcolor - Colors for NEST Graphs

Clinical reporting figures require to use consistent colors and configurations. As a part of the Roche open-source clinical reporting project, namely the NEST project, the 'nestcolor' package specifies the color code and default theme with specifying 'ggplot2' theme parameters. Users can easily customize color and theme settings before using the reset of NEST packages to ensure consistent settings in both static and interactive output at the downstream.

Last updated 1 years ago

5 stars 1.82 score 30 dependencies